PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10983.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 357aa    MW: 40067.5 Da    PI: 6.7921
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10983.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.1e-18252286135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Sme2.5_10983.1_g00001.1 252 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 286
                              99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-7716341IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.677246282IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-14246283IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.3E-16246296IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-15247310No hitNo description
CDDcd002027.51E-14251298No hitNo description
PROSITE patternPS003440252277IPR000679Zinc finger, GATA-type
PfamPF003207.4E-16252286IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
METTPDNFFQ ATYYNSEFTS EKHLSDAKNG EHFAVDDLLD LPNDDGMVTD GTLDLTVTGN  60
STDCSTVDNS CNSSLSGSNL HQQLLPHNIS YRNFPDGNFS GEFPLPYEDL AELEWLSNFV  120
EESFSSNEMH NMQIMQGMRR GTDSEIHQFI PDPNRASAAS STMFKPEMPV PAKARSKRSR  180
MAPGNWASRL LVVSPNTTTP DSSMDTMSSS SESGMIISSS EKNKTVKSST WKKKESSIHH  240
VPSNNNSEGR KCLHCATDKT PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL  300
TKHSNSHRKV LEIRRQKEVT HTQHQHQFLP QNMMFNVSNA DDYLIHQRIG PDYRQII
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245156.20.0GATA transcription factor 12
TrEMBLA0A3Q7HNI50.0A0A3Q7HNI5_SOLLC; GATA transcription factor
STRINGSolyc08g066510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-72GATA transcription factor 12