PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11340.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 145aa    MW: 16129.1 Da    PI: 7.288
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11340.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-075584332
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg 32
                             rW+++E+  ++ +  +lG+g+W++Ia+ + 
  Sme2.5_11340.1_g00003.1 55 RWSEDEQRAFLIGLDKLGKGNWTAIAKQFV 84
                             9*************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-74993IPR009057Homeodomain-like
SMARTSM007177.0E-452118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-95292IPR009057Homeodomain-like
PROSITE profilePS500905.9935592IPR017877Myb-like domain
PfamPF002495.0E-65592IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MAKEIYSDAK IGQYNSRTTK DHIKLFGIEI SVNNFCSSGE ESTSSSCCTS SKGRRWSEDE  60
QRAFLIGLDK LGKGNWTAIA KQFVPTGTPT QVAIMFGVET SHRWGNQCFL FFKNEEILDT  120
TGKTIYGDAT SNGVMANGYF FNSLY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168974.16e-30PREDICTED: transcription factor MYB1R1-like
TrEMBLM1BLL91e-28M1BLL9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000479122e-29(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-14MYB_related family protein