PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11363.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 265aa    MW: 30300.8 Da    PI: 9.0689
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11363.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.5e-1521104186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                              +W++  + +Liea  ++  +l+rg+l++++W+ev++ +  r+ g+  +r+ +qCk++++ l+k+yk +k+ +       +s++p++
  Sme2.5_11363.1_g00002.1  21 CWSEGATETLIEAWGDRYLSLNRGNLRQKDWKEVADSVnsRQNGVkpHRTDVQCKNRIDTLKKKYKLEKTKST------VSKWPFY 100
                              7*************************************9877777779******************9998877......469**** PP

                 trihelix  83 dqle 86 
                              ++l+
  Sme2.5_11363.1_g00002.1 101 NRLD 104
                              *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.5E-2620104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MESQISTQNT PRHHAGGREY CWSEGATETL IEAWGDRYLS LNRGNLRQKD WKEVADSVNS  60
RQNGVKPHRT DVQCKNRIDT LKKKYKLEKT KSTVSKWPFY NRLDYLIGTN NVSASPCNRR  120
PAATNSLTVK SKFSSDSNVG GLNYSGGSSR LNSSSSNDSS RDDLAFGSGE RKKYVELSED  180
TTAYKELARA ILRFGEIYER IESSKQQQMM ELEKQRMEFT KDLEVQRMNM FMETQLQIER  240
SKCPDKHPPS AGEISNIYYI CLDSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166825.11e-154PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG88e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM1CY121e-154M1CY12_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000771991e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137071215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.12e-59sequence-specific DNA binding transcription factors