PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_11735.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 830aa MW: 95780.1 Da PI: 8.2811

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_11735.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.9	3e-22	68	151	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY++YA++vGF +++++s++sk++g++++ + Cs+ g+++e+ ++ r+ +t+Cka++++k+ +dgkw+++++ +eHn Sme2.5_11735.1_g00001.1 68 SFYRDYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGTKRESGSS-------RSCPKTDCKASIHLKRYEDGKWHIHSFLKEHN 146 5**************************************999877.......9999************************ PP FAR1 87 Helap 91 He++p Sme2.5_11735.1_g00001.1 147 HEICP 151 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.4E-20	68	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-26	233	326	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.953	513	549	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-7	520	547	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.9E-8	524	551	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
MEIDLQLSSG RDKMLDVYVD TNAIDQENVD TSGNGMDMDM DINIIDKVME NSEPKKGMEF 60 ETKEAAYSFY RDYARSVGFG ITIKASRRSK KSGKFIDVKI ACSRFGTKRE SGSSRSCPKT 120 DCKASIHLKR YEDGKWHIHS FLKEHNHEIC PDDFYYSFKG RSKQSANVVY PKKGLQRALD 180 EGDVELLLDT LALMQAERPN SYYAIDFDKE KRMRNVFWVD AKGRNDYSYF GDVIHLDTYY 240 IRNKYKVPFL PIVGVNHQFQ FLLLGCALIG DESSSTFTWL MRTWLRAVGG QSPRVVITDD 300 DISRKEAVEE VFPKAKHCFC LWNVMEKVSQ DLGHKITKSE DFVKKLKKCM WFPLKEEEFE 360 KRWWKMVDSF KLRDDDLIRS LFENRTKWVP VYMRNTFLAG LSTLERSASV SSFFERYISS 420 ETMFKEFIDQ YKLFVHEMYE EEAKSDIETR HRQPTIKTLT PYEKQMSNVY TYSVFMKFQA 480 EIFGVATCAI LNEGEQETEK LYRVNDHEKH QSFMVSWCAR ESSIVCSCRF FEYTGILCRH 540 AIMVLQVSGV PNIPAVYALE RWTLEAKTKG IARGILSNPR YRIQRLNDLC KLAAKFGEVG 600 SLSQETYESA LNALQTALHG CVTANNSVKS ALVSNISFSQ CNPKVDEEIQ GSSMETSSKR 660 KKVQKQRKVQ SNVEVLSSRI QDSSLLMDQS NSKMPTHEDA FLAQRHVQGM DLGSRMATME 720 GYYAPPHQSV HGLVLHRLCF QALKQLPTTF FLAFYKYEWL HPIMFRFTSQ FSQRNLNYIS 780 AHGGHYSPQS IQGLGQLSFR APLLHTSFDI QRNSSDMDNS TSVTGKHLQD

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

MEIDLQLSSG RDKMLDVYVD TNAIDQENVD TSGNGMDMDM DINIIDKVME NSEPKKGMEF  60
ETKEAAYSFY RDYARSVGFG ITIKASRRSK KSGKFIDVKI ACSRFGTKRE SGSSRSCPKT  120
DCKASIHLKR YEDGKWHIHS FLKEHNHEIC PDDFYYSFKG RSKQSANVVY PKKGLQRALD  180
EGDVELLLDT LALMQAERPN SYYAIDFDKE KRMRNVFWVD AKGRNDYSYF GDVIHLDTYY  240
IRNKYKVPFL PIVGVNHQFQ FLLLGCALIG DESSSTFTWL MRTWLRAVGG QSPRVVITDD  300
DISRKEAVEE VFPKAKHCFC LWNVMEKVSQ DLGHKITKSE DFVKKLKKCM WFPLKEEEFE  360
KRWWKMVDSF KLRDDDLIRS LFENRTKWVP VYMRNTFLAG LSTLERSASV SSFFERYISS  420
ETMFKEFIDQ YKLFVHEMYE EEAKSDIETR HRQPTIKTLT PYEKQMSNVY TYSVFMKFQA  480
EIFGVATCAI LNEGEQETEK LYRVNDHEKH QSFMVSWCAR ESSIVCSCRF FEYTGILCRH  540
AIMVLQVSGV PNIPAVYALE RWTLEAKTKG IARGILSNPR YRIQRLNDLC KLAAKFGEVG  600
SLSQETYESA LNALQTALHG CVTANNSVKS ALVSNISFSQ CNPKVDEEIQ GSSMETSSKR  660
KKVQKQRKVQ SNVEVLSSRI QDSSLLMDQS NSKMPTHEDA FLAQRHVQGM DLGSRMATME  720
GYYAPPHQSV HGLVLHRLCF QALKQLPTTF FLAFYKYEWL HPIMFRFTSQ FSQRNLNYIS  780
AHGGHYSPQS IQGLGQLSFR APLLHTSFDI QRNSSDMDNS TSVTGKHLQD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015082858.1	0.0	protein FAR1-RELATED SEQUENCE 2-like isoform X4
TrEMBL	A0A3Q7HCC9	0.0	A0A3Q7HCC9_SOLLC; Uncharacterized protein
STRING	Solyc07g043260.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2