PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_11935.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 232aa MW: 26200.6 Da PI: 6.8023

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_11935.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.7	6.1e-13	19	51	11	43
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsst 43 + kR + ++KKA+E S+LC++++a+iifs++ Sme2.5_11935.1_g00001.1 19 SILDKRATSLFKKANEFSILCGVDIAIIIFSPE 51 5578***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.2E-11	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.283	1	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-15	3	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-13	13	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MNRKSLRISR NCSENVRKSI LDKRATSLFK KANEFSILCG VDIAIIIFSP EEIQPIVWKS 60 ADLAKEVLLR HSKFIEDERL KKLTKHEKYL SNKVNEKQEK IRKIEKINEE KEMKILFNQL 120 VEGKSISELS AREIQGLLRL STATIAKLHE RNENINQQNQ PSEPQNSPSN LEFTNENGTS 180 LPGSMDDLIN DMGFIDTNNN YFGLGGENSI GSTPTEGDGI NSGDNGYFKG LV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343472.1	1e-95	PREDICTED: MADS-box protein AGL24-like
TrEMBL	M1E0R3	3e-94	M1E0R3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400097491	5e-95	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40210.1	1e-13	AGAMOUS-like 48