PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_11974.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 270aa    MW: 32192.1 Da    PI: 4.8526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_11974.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.6e-18591193
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                             ffkv+  +  ++ +r+ +p  ++  ++ kk+ +++++l+d+ g+ W +++   k+ + ++++ GW++F ++n L+ gDf++F +dg++
  Sme2.5_11974.1_g00002.1  5 FFKVF--NPKTSAKRMKIPTGYT-IYK-KKKLPRKVSLKDRYGNMWPIRV--IKNERNFYFQYGWEKFIEDNTLEYGDFLIFDYDGKE 86
                             88988..566666789******8.444.456999****************..999999***************************988 PP

                             EE..E CS
                       B3 89 efelv 93
                             +f ++
  Sme2.5_11974.1_g00002.1 87 TFDFK 91
                             88554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-20397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.057396IPR003340B3 DNA binding domain
SMARTSM010195.0E-12596IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-19598IPR015300DNA-binding pseudobarrel domain
CDDcd100176.04E-14593No hitNo description
PfamPF023629.5E-16591IPR003340B3 DNA binding domain
PROSITE profilePS508639.516189270IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-9202269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-12203269IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEKGFFKVFN PKTSAKRMKI PTGYTIYKKK KLPRKVSLKD RYGNMWPIRV IKNERNFYFQ  60
YGWEKFIEDN TLEYGDFLIF DYDGKETFDF KLLGINGCVK NDVGGKKKEE EMNVEHQKSV  120
ETTGKSWASD SNNSSFDDSD EDYIVEEEDT KEQVEKEEEK ESHETALCSK RRYLEEEEDE  180
KNEGEREEEI EEIGNEMAGT HKKKYIPIDL VRDYKLEFPT SITIRNSVGR EFETRVKKWA  240
DDRVWLVGGW RNLCRWNLVE KDDRCICEFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-122988104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071035.14e-89B3 domain-containing protein At5g60130-like
RefseqXP_015071045.14e-89B3 domain-containing protein At5g60130-like
TrEMBLM1DXS31e-108M1DXS3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000961321e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-13B3 family protein