PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_12535.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 119aa MW: 13554.9 Da PI: 11.9603

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_12535.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.1	1.3e-24	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ks r+v f+kRr+g++KKA+ LS+LCda+va++i+s++g+l+e+ss Sme2.5_12535.1_g00003.1 10 RIEEKSSREVAFCKRRKGLIKKANQLSILCDADVALVIISNRGRLHEFSS 59 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.006	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-24	1	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-30	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-24	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.9E-22	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-24	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-24	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MGRRKLEIRR IEEKSSREVA FCKRRKGLIK KANQLSILCD ADVALVIISN RGRLHEFSSN 60 IRVRGRAQPQ GSIVRRLTLH FCQRLFPRLE PVTSWSHGSN STGCSKAPLL KSFKFPPIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	4e-14	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_Q	4e-14	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_R	4e-14	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_S	4e-14	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_A	4e-14	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_B	4e-14	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_C	4e-14	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_D	4e-14	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_E	4e-14	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_F	4e-14	1	60	1	60	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU836643	4e-37	KU836643.1 Capsicum annuum clone BAC422K18, complete sequence.
GenBank	KU836644	4e-37	KU836644.1 Capsicum annuum clone BAC547H22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015170242.1	3e-27	PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
Swissprot	Q2QW53	6e-22	MAD13_ORYSJ; MADS-box transcription factor 13
TrEMBL	M1BI80	2e-26	M1BI80_SOLTU; Uncharacterized protein
TrEMBL	M1BI81	3e-26	M1BI81_SOLTU; Uncharacterized protein
TrEMBL	M1BI82	5e-26	M1BI82_SOLTU; Uncharacterized protein
TrEMBL	Q6UGR2	1e-26	Q6UGR2_PETHY; MADS-box protein 17 (Fragment)
STRING	PGSC0003DMT400045804	9e-27	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42830.1	2e-16	MIKC_MADS family protein

Publications ? help Back to Top
Gindullis F,Rose A,Patel S,Meier I Four signature motifs define the first class of structurally related large coiled-coil proteins in plants. BMC Genomics, 2002. 3: p. 9 [PMID:11972898] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yamaki S,Satoh H,Nagato Y Gypsy embryo specifies ovule curvature by regulating ovule/integument development in rice. Planta, 2005. 222(3): p. 408-17 [PMID:16001259] Dreni L, et al. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J., 2007. 52(4): p. 690-9 [PMID:17877710] Yamaki S,Nagato Y,Kurata N,Nonomura K Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice. Dev. Biol., 2011. 351(1): p. 208-16 [PMID:21146515] Li H,Liang W,Yin C,Zhu L,Zhang D Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy. Plant Physiol., 2011. 156(1): p. 263-74 [PMID:21444646] Li H, et al. Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949]