PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_12710.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 125aa    MW: 14543.3 Da    PI: 10.0798
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_12710.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.8e-102381563
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                             ++ +r+++NRe+ArrsR R+k  +e L     +L+++ +  ++++++ + +  +l++e+
  Sme2.5_12710.1_g00001.1 23 RKRKRMESNRESARRSRMRRKHHLEALMSQLTQLQSQSTIWRERIDSVRRNFHALDTEN 81
                             67899******************************************999999888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-101977No hitNo description
SMARTSM003381.8E-161983IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7722184IPR004827Basic-leucine zipper domain
PfamPF001701.4E-72370IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-102377No hitNo description
CDDcd147023.83E-122475No hitNo description
PROSITE patternPS0003602641IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MALTQQPASL GSNGQRYATN DERKRKRMES NRESARRSRM RRKHHLEALM SQLTQLQSQS  60
TIWRERIDSV RRNFHALDTE NNVLRAEIAE LTERLDSQNS LTRFWADANG LAVDIPEIPD  120
TLLEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389181e-132AC238918.11 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence.
GenBankAC2459951e-132AC245995.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-57d7 map 1, complete sequence.
GenBankAF1766411e-132AF176641.1 Lycopersicon esculentum bZIP DNA-binding protein mRNA, complete cds.
GenBankHG9755131e-132HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234339.13e-73bZIP transcription factor
RefseqXP_015061256.13e-73bZIP transcription factor 53-like
TrEMBLA0A0V0I9185e-72A0A0V0I918_SOLCH; Putative bZIP DNA-binding protein-like
STRINGSolyc01g079480.2.11e-72(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28102351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.11e-15basic region/leucine zipper motif 53