PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_13108.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 123aa MW: 14377.4 Da PI: 7.591

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_13108.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	21.7	2.6e-07	4	46	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i ++ r v+fskR+ + + Ae L +a+v v++fs++gk Sme2.5_13108.1_g00003.1 4 IGSEKARAVSFSKRKSTPFQQAEKLANQDEADVGVMLFSPSGK 46 778999***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.096	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.07E-12	1	74	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0019	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-10	4	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MKLIGSEKAR AVSFSKRKST PFQQAEKLAN QDEADVGVML FSPSGKPCSY GSTKIETIMD 60 KYFDVKLEDH HRDYAEEKSD DFAELEYLRK ELATWKEKEK NRILMYKIMY PGSKIPPYKH 120 MEE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027771453.1	7e-51	MADS-box transcription factor 23-like
TrEMBL	M1DHK1	7e-48	M1DHK1_SOLTU; Uncharacterized protein
STRING	Solyc03g119680.1.1	2e-50	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	4e-12	AGAMOUS-like 29