PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_13254.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 245aa    MW: 28178.6 Da    PI: 10.5735
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_13254.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21.1e-111452082087
                              HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                fa+++g+  ++  +++l+de+ r W v+l   k + r+ ++kGW +F +an +++gD   F+l+++
  Sme2.5_13254.1_g00001.1 145 EAFARRNGLMRRC--KMMLKDERRRLWPVEL--GKVGPRFAIKKGWPQFREANAVQVGDPYKFELIDN 208
                              5799999999666..7***************..99999**************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-586140IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-692220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-13145218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-14146218IPR015300DNA-binding pseudobarrel domain
CDDcd100175.05E-10146209No hitNo description
PfamPF023622.3E-10146208IPR003340B3 DNA binding domain
PROSITE profilePS5086310.546158219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSSHKDFLGV EAANDMPRDR PHFIYTIKHS TISKYMLAAL SLEVDDLRAN ASLHPEEKPN  60
LDANRVSAQG LAMHAPKAHA PAPASANSNS HFVSTIKPYN INRSYLKIPV GFLKYLKGYE  120
HIKRAVLKRG DKKWRIKVNE HRFEEAFARR NGLMRRCKMM LKDERRRLWP VELGKVGPRF  180
AIKKGWPQFR EANAVQVGDP YKFELIDNGI IPIAYFHRKY SGKDAKASEK PLTNINQQLV  240
IYKEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754477e-62HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597679.11e-47PREDICTED: B3 domain-containing protein REM17-like isoform X3
RefseqXP_016469440.11e-47PREDICTED: B3 domain-containing protein REM17-like isoform X3
TrEMBLA0A1S3ZYC93e-46A0A1S3ZYC9_TOBAC; B3 domain-containing protein REM17-like isoform X3
STRINGXP_009597666.17e-46(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.14e-08B3 family protein