PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_13510.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 221aa MW: 24322.7 Da PI: 6.613

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_13510.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	103.3	2.2e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++Cvl+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA r+ +Pv+Gavg+++ Sme2.5_13510.1_g00001.1 2 SCNGCRVLRKGCSDNCVLRPCLqwietPESQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEAAGRTVNPVNGAVGLLW 87 6*********************************************************************************** PP DUF260 82 klqqqleqlkaelall 97 +++++++q+++e++l+ Sme2.5_13510.1_g00001.1 88 TGNWHVCQAAVETVLR 103 ********999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.043	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MSCNGCRVLR KGCSDNCVLR PCLQWIETPE SQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI PEFLGASLEI 120 DEVSECTDAF KLQDPRHNML PKMQKRRRFP EETSMLADLD LSLTPGFNQK VHSSHPLPEN 180 HGRPETPSMN SEESGTTTCF ESTGVIGDHQ GKEPKLLSLF N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	PKMQKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226516	1e-166	AC226516.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0053H21, complete sequence.
GenBank	HG975514	1e-166	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231911.1	1e-148	LOB domain-containing protein 37
Swissprot	Q9FN11	8e-81	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A3Q7FBF8	1e-147	A0A3Q7FBF8_SOLLC; Uncharacterized protein
STRING	Solyc02g092550.2.1	1e-148	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-83	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]