PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_13638.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 199aa MW: 23093.7 Da PI: 8.9435

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_13638.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.6	9.1e-13	97	182	11	84
HHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 11 lksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 l+++r+ +p +++++ + + ++ ++++d++g+s +k++ +k+ +r v+ +GW++ v an+L+ gD+v + Sme2.5_13638.1_g00001.1 97 LNLSRFLIPTECCTTLldcmstseiekiinQDD--TGLNVSVMDPKGNSHGMKFTRWKSLKRLVFNRGWNKLVAANHLQKGDIVHL 180 455999999999988899999988887764333..6678********************************************977 PP EE CS B3 83 kl 84 + Sme2.5_13638.1_g00001.1 181 WH 182 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-16	87	185	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.24E-17	88	185	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.51E-14	92	194	No hit	No description
Pfam	PF02362	5.0E-10	96	181	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.952	134	199	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MTTIRLFGND IRVVEKEKEK EKEKEKEEEE KSIMLFGKPI LPYAALNKNN EQQQHYNRLN 60 NITYLPPSNM CLAIQFLQGS QLVYIGSKYV ENSDVNLNLS RFLIPTECCT TLLDCMSTSE 120 IEKIINQDDT GLNVSVMDPK GNSHGMKFTR WKSLKRLVFN RGWNKLVAAN HLQKGDIVHL 180 WHFRTPYNKP CFAINIIKN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081571.1	6e-76	B3 domain-containing protein At2g32645-like
TrEMBL	M0ZGI2	3e-73	M0ZGI2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400000316	5e-74	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11679	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-06	RAV family protein