PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_13885.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 180aa MW: 20547.3 Da PI: 7.2126

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_13885.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.6	1.1e-10	17	60	8	50
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50 +rq + kR++ + KA+E+S+LCd++v +i f + + + +++ Sme2.5_13885.1_g00001.1 17 KRQQLLQKRLASLCNKAYEMSILCDVKVGIISFTPgKTDVCTWP 60 6777799************************9987334567776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	1.2E-10	14	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.16E-11	14	92	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.722	14	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MSRKGVCSTT KNLDEGKRQQ LLQKRLASLC NKAYEMSILC DVKVGIISFT PGKTDVCTWP 60 SVIEANGIVN DYLACPEKQR QYKLFTHETY LQPTVNDREE NSRKLDQMAE EKEMENLFDQ 120 LAEGRKRCDE FDVRQIKGLL KFLAVKKAKL SQRKIQFNEN VANESGANEN NAAEENDGHP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006356445.1	4e-79	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	M1DAI1	9e-78	M1DAI1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400085892	2e-78	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	1e-14	AGAMOUS-like 96