PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_13894.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 82aa    MW: 9597.44 Da    PI: 9.9429
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_13894.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.32.3e-19858151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ie+ ++rqvtfskRr  +lKKAeE+ + Cd++v+ + +s+ ++l  ++s
  Sme2.5_13894.1_g00002.1  8 KKIEEITKRQVTFSKRRSSLLKKAEEIAICCDVDVLFVALSPADRLSKFCS 58
                             689*********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-19159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.067160IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-16222IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-22379IPR002100Transcription factor, MADS-box
PfamPF003192.3E-18956IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-162237IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-163758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MGKKIEIKKI EEITKRQVTF SKRRSSLLKK AEEIAICCDV DVLFVALSPA DRLSKFCSQK  60
RIEDVLQCYL KLSIERRLTY MN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159179.16e-44PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ1PFC22e-21AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A314LD595e-36A0A314LD59_NICAT; Uncharacterized protein
TrEMBLM1DHB51e-38M1DHB5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000890462e-39(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-19AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]