PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_14019.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 241aa    MW: 27645.2 Da    PI: 7.9795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_14019.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY772.2e-2495152259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +D+++W K+GqK  kg +fpr+YY+C+ + C++kk +e+s ++++++ + Y+geH h+
  Sme2.5_14019.1_g00001.1  95 NDKWAWHKFGQKLLKGFPFPRNYYKCSAKLCEAKKTIEKSPTNENYFLVSYSGEHSHD 152
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.24789154IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-2290154IPR003657WRKY domain
SuperFamilySSF1182901.31E-2092154IPR003657WRKY domain
SMARTSM007742.4E-2194153IPR003657WRKY domain
PfamPF031062.3E-1895152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDQNNNQQLY FHPIQPTQFS QQNFLAASPT TVTCVPTTTT TSPEWIDIQQ QQHMMHDNVD  60
PDLTLPMKTP LIKTYKGKNQ PVRVFYEVLL EELTNDKWAW HKFGQKLLKG FPFPRNYYKC  120
SAKLCEAKKT IEKSPTNENY FLVSYSGEHS HDPPTYRRPL IFYNSSSKYK LPRGINIVPK  180
ALSVNTSSVS SSKHAKRSKI DVSSICPIAT TLKIESNNEM VNAVVENKND VEEEENVNED  240
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1584154474WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158586.16e-96PREDICTED: probable WRKY transcription factor 27
TrEMBLM1DN198e-93M1DN19_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000916261e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-24WRKY DNA-binding protein 27