PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_14039.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 840aa    MW: 95969.1 Da    PI: 8.4019
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_14039.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.2e-11640730297
                              EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               k+l ps  + ++ + +p +f++e+  ++ k++   l  +d  g  We k+ +r ks+ ++ ++ W +Fv  ++Lk+gD+++F l+
  Sme2.5_14039.1_g00001.1 640 YKIL-PSAESFTNKMQVPSSFIKENkkMLTKKC---LLKMDVAGMWWEAKI-VREKSNYFICEGDWLQFVLHHQLKQGDVLLFFLV 720
                              5666.677777777***********54444333...444789*********.78888999999**********************9 PP

                              SSSEE..EEEEE CS
                       B3  86 grsefelvvkvf 97 
                              ++s+f  +v+ f
  Sme2.5_14039.1_g00001.1 721 ENSTF--HVQPF 730
                              98988..88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF566726.12E-25203298No hitNo description
Gene3DG3DSA:3.10.10.102.0E-17234298No hitNo description
SuperFamilySSF566724.89E-6299336No hitNo description
SuperFamilySSF1019361.33E-15632735IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-15635733IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.52638733IPR003340B3 DNA binding domain
SMARTSM010192.7E-11639733IPR003340B3 DNA binding domain
PfamPF023623.0E-9639728IPR003340B3 DNA binding domain
CDDcd100173.46E-11639730No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MKDRRRGHQT DRRNNRRLPK RARSFGSAVD FCGRQSQPQQ SGPPPRPVPI LYAAVRATRC  60
GIIPMELVQK GQPRLLAQLE LLLQLQWLCA LQGEVLQLQQ VMAEVAVELQ VDLIELDMTD  120
FDITMGMDWL ASCYAKVDSY KKIVQFQFLG EPVLEWSGNI AMPRGKFISY LKASRMIKRG  180
CLYHLVRVHD LNAEPPTLQS IPIVSEFPDV FLDELPKLPP EREVEFAIDL LLDTQPILIL  240
SYRIAPAELK ELKEQLRNLL DKGFIRSSTS PWGAPVLFVR KKDGSLWMCI DYRQLNKLSS  300
VVFLGHIIGA DGVWVDSQKI EAVKNWPRPT TPMERRWLEL LKDYDMDILY HPGKANVVAD  360
ALSQIKQRQY EDPILVRYRD IALEKEQTPF EVFPEGTLLF KGEDRTLETW RVSAGNGDTI  420
VEVGEYQHGL YYRLTSHPMK VWERRVDWTR CDPADGGESE THPGAVFLKV SPMKGVMRFG  480
KKGKHSSRIG KVAYELELPT DLGGVHPVFY VSMLRKCIGD PFRVFPIDDD VHRLPAAKQG  540
TDAQSRLRIP VCFLKSSFAS EQLVGTFATS SFRIMHFYGY GRALYHLLIP LVCIEVCGYL  600
DVLVGPFVCI YVCTVAGTLL YTGGIKLKML IHPDNTAAFY KILPSAESFT NKMQVPSSFI  660
KENKKMLTKK CLLKMDVAGM WWEAKIVREK SNYFICEGDW LQFVLHHQLK QGDVLLFFLV  720
ENSTFHVQPF TKKYCNNIVH ERQVLYEELS SSSKEKTTGP SKRARKMAPS DTEKRSVGMP  780
SNYESKHEDN PHYNNPKREN ASLDHNVVEI EYLVETYGSL VISDHSTENL SHGPVRTHIL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327