PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_14136.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ZF-HD

Protein Properties

Length: 103aa MW: 11488.8 Da PI: 4.8553

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_14136.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	67.4	2.6e-21	16	70	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++Y ClkNhA + G ++vDGC Ef++s g++gt++ + Ca C+C R FHR +++ Sme2.5_14136.1_g00001.1 16 VIKYGVCLKNHATKFGDYVVDGCLEFVKS-GDNGTKEEFICATCECFRGFHRMNNQ 70 579***********************9.9999****************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.0E-23	17	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-10	18	66	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-16	18	67	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	18.333	19	68	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MANNSISSNP SDDGKVIKYG VCLKNHATKF GDYVVDGCLE FVKSGDNGTK EEFICATCEC 60 FRGFHRMNNQ SFYRDPVIRP PLTLSDCERS SVDESLPSEE NKP

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	6e-48	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021995017.1	6e-18	zinc-finger homeodomain protein 5-like
Swissprot	Q9SB61	2e-13	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	M1DCM9	5e-35	M1DCM9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400086860	8e-36	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13748	6	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-16	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]