PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_14251.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WRKY

Protein Properties

Length: 230aa MW: 26034.5 Da PI: 7.017

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_14251.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	75.1	8.8e-24	70	127	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +D+++W K+GqK kg +fpr+YY+C+ + C++kk +e+s ++++++ + Y+geH h+ Sme2.5_14251.1_g00004.1 70 NDKWAWDKFGQKLLKGFPFPRNYYKCSAKLCKAKKTIEKSPTNENYFLVSYSGEHGHD 127 8*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.6E-22	59	129	IPR003657	WRKY domain
PROSITE profile	PS50811	25.511	64	129	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-20	67	129	IPR003657	WRKY domain
SMART	SM00774	9.4E-20	69	128	IPR003657	WRKY domain
Pfam	PF03106	1.1E-17	70	126	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
AASPTTVTCV PTTTTTSPEW IDIQQQQHMM HDNVDPDLTL PMKTPLIKTY KGKNQPVRVF 60 YEVSLEELTN DKWAWDKFGQ KLLKGFPFPR NYYKCSAKLC KAKKTIEKSP TNENYFLVSY 120 SGEHGHDPPT YPRPLIFYNS SSKYKLPRGI NIVPKALSVN TSSVSSSKRA KCSKIDVFSI 180 CPTATTLKIE SNNEMVNAVV ENKNDVEEEE NVNEDIIMEF EEHQGVTSST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-15	59	129	4	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015158586.1	2e-81	PREDICTED: probable WRKY transcription factor 27
TrEMBL	M1DN19	8e-85	M1DN19_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400091626	1e-85	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3668	13	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	2e-23	WRKY DNA-binding protein 27