PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_14501.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18034.5 Da    PI: 7.3513
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_14501.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.62.1e-202774249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +i  ksn qvtfskRr+g++KKA ELS+L +a+va+i+ s+ gk + +
  Sme2.5_14501.1_g00002.1 27 KIAKKSNLQVTFSKRRAGLFKKARELSTLSGAQVAIIVESPGGKHFSF 74
                             6899*************************************9997766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-281877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.1141878IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-241988IPR002100Transcription factor, MADS-box
CDDcd002659.65E-321989No hitNo description
PRINTSPR004041.7E-162040IPR002100Transcription factor, MADS-box
PfamPF003195.0E-222774IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-164055IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-165576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MENKETAAVA TVTKKRTRGR QKIPIEKIAK KSNLQVTFSK RRAGLFKKAR ELSTLSGAQV  60
AIIVESPGGK HFSFGTPSVD SVIHRFEEDG FNSANWWEDL CLEGLGLQEL EECLAALEVL  120
KKNLLKKNQT SSDNDDLAMM GSCSFDDVLK FLGIDLNQNT EGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158921.13e-69PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1DJG17e-68M1DJG1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000900241e-68(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-29M-type_MADS family protein