PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_14769.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 156aa MW: 18095.8 Da PI: 10.1848

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_14769.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.5	7.3e-11	3	46	41	90
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++g++W vk+ ++ + l++GWk+F+k+n+L+ gD +vF+++g+ ef Sme2.5_14769.1_g00001.1 3 LTGKKWLVKV--NGWR----LEEGWKKFAKENDLQLGDLLVFRHEGNLEF 46 579*****..6665....9********************9987444 PP
2	B3	47.5	3.3e-15	48	122	17	95
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +lpk+fa ++g+ + ++++l+++de+ r W+++l ++++ +vl+ GW +F+ an L+egD ++F+++++ ++++ k Sme2.5_14769.1_g00001.1 48 RLPKRFAMANGLFN-KKRDLIIRDERQRLWNLRL--APYGSSvHVLG-GWIHFCTANSLQEGDYMMFEVVSN-GEKPIWK 122 59******7664.5569***********..88888857777.******************8874.4445555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	1.98E-10	1	42	No hit	No description
PROSITE profile	PS50863	7.415	1	31	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.44E-11	3	46	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.7E-10	4	46	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.5E-7	4	45	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.605	32	126	IPR003340	B3 DNA binding domain
SMART	SM01019	4.6E-8	35	126	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.94E-15	48	124	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.09E-13	48	111	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.9E-14	48	124	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-12	48	123	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MVLTGKKWLV KVNGWRLEEG WKKFAKENDL QLGDLLVFRH EGNLEFERLP KRFAMANGLF 60 NKKRDLIIRD ERQRLWNLRL APYGSSVHVL GGWIHFCTAN SLQEGDYMMF EVVSNGEKPI 120 WKFRSITDRR HKTSDVATPI SQAPASTSAD ANPYFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	3e-57	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015084058.1	1e-47	putative B3 domain-containing protein REM15
TrEMBL	A0A2G2UZA4	1e-48	A0A2G2UZA4_CAPBA; Uncharacterized protein
STRING	XP_009767536.1	9e-38	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA322	15	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24645.1	2e-16	B3 family protein