PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_15235.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 343aa    MW: 38390.7 Da    PI: 9.8334
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_15235.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.92.3e-121150342
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             ien+   +v++ kR +g+l KA EL +L dae+a ii+s+
  Sme2.5_15235.1_g00002.1 11 IENENEGKVSYKKREKGLLTKADELGILRDAEIAAIIYSP 50
                             9**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.2E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.825149IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-17395IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-8323IPR002100Transcription factor, MADS-box
CDDcd002665.37E-17384No hitNo description
PfamPF003195.4E-121155IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-83859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.80.10.109.2E-35156329IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.81E-31157325IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138551.9E-8175217IPR001611Leucine-rich repeat
SMARTSM003690.0032181204IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.727183204IPR001611Leucine-rich repeat
PRINTSPR000192.3E-5184197No hitNo description
PROSITE profilePS514505.779206228IPR001611Leucine-rich repeat
PRINTSPR000192.3E-5252265No hitNo description
SMARTSM0036924252276IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.009254277IPR001611Leucine-rich repeat
PROSITE profilePS514505.263278299IPR001611Leucine-rich repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPRKKVKFAL IENENEGKVS YKKREKGLLT KADELGILRD AEIAAIIYSP YKNEPTVFSN  60
HGSAVNTLTK FKELLANDRS KKMVTKDEFT MKRIQKMNEK LIKKNLKQVH EAMKKKIGEE  120
GYTSNFPQSI VGPMRFELSG VMLWYGACLK VAIIPDKNVV NLTAKSFGLS GVILDNTIGK  180
LTKLKYLDLS NNKLTGFPSD IWSLGSLKYL NLLHNHISGD LSRNIGNFGV LEIMEFSINN  240
LFGKIPEAIS SLSSLHSLNL SKNMFDSEIL SGILRCHSLE SLDLLENRLT GFLYGNLFKG  300
SVVGLFEGVL EVIDLSRNQF DGHISQTLGI RNMSWIGLAL ELV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mna_A5e-1515833963423LRR receptor-like serine/threonine-protein kinase FLS2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-150HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082461.14e-77probable LRR receptor-like serine/threonine-protein kinase At2g24230
SwissprotC0LGK96e-42Y2242_ARATH; Probable LRR receptor-like serine/threonine-protein kinase At2g24230
TrEMBLA0A3Q7H2N61e-75A0A3Q7H2N6_SOLLC; Uncharacterized protein
TrEMBLM1DJN69e-76M1DJN6_SOLTU; Uncharacterized protein
STRINGSolyc07g005540.1.12e-76(Solanum lycopersicum)
STRINGPGSC0003DMT4000901092e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-15AGAMOUS-like 38
Publications ? help Back to Top
  1. Diévart A,Clark SE
    Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases.
    Curr. Opin. Plant Biol., 2003. 6(5): p. 507-16
    [PMID:12972053]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Gou X, et al.
    Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana.
    BMC Genomics, 2010. 11: p. 19
    [PMID:20064227]
  4. ten Hove CA, et al.
    Probing the roles of LRR RLK genes in Arabidopsis thaliana roots using a custom T-DNA insertion set.
    Plant Mol. Biol., 2011. 76(1-2): p. 69-83
    [PMID:21431781]