PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_15414.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 195aa    MW: 21637.2 Da    PI: 8.4142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_15414.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31017e-3225130199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k ltpsdv+k++rlv+pk+ ae++       + + e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+
  Sme2.5_15414.1_g00001.1  25 FEKPLTPSDVGKLNRLVIPKQNAEKYfplndsiNDSGEKGFLLSFEDELGKLWKFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDV 110
                              99****************************99944556899********************************************* PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              v+F++++ ++ + +++++rk
  Sme2.5_15414.1_g00001.1 111 VLFERHRIDGDRQFIGWRRK 130
                              ****7555888889999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-3917133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-3120126IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-2823120No hitNo description
PROSITE profilePS5086313.88825131IPR003340B3 DNA binding domain
SMARTSM010191.7E-2325131IPR003340B3 DNA binding domain
PfamPF023621.2E-2825131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MESSGNSSSP PKQNEDTEIP KEHLFEKPLT PSDVGKLNRL VIPKQNAEKY FPLNDSINDS  60
GEKGFLLSFE DELGKLWKFR YSYWNSSQSY VLTKGWSRFV KEKKLDAGDV VLFERHRIDG  120
DRQFIGWRRK NTAAAAVTTV APPGGGGGSG GWGHVYPFPS AGGPYQTDFL HAGYGLPKRC  180
QPDEISPGIR SVDVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-48211304113B3 domain-containing transcription factor NGA1
5os9_B9e-48211304113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1979791e-155HQ197979.1 Solanum tuberosum clone BAC BC163l15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056425.11e-98B3 domain-containing protein At2g36080-like
SwissprotQ9FNI31e-55Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLM1CQ492e-94M1CQ49_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000723544e-95(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.22e-58B3 family protein