PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_15558.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ERF

Protein Properties

Length: 207aa MW: 23284 Da PI: 10.3943

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_15558.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58	2.3e-18	59	109	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g+ Sme2.5_15558.1_g00001.1 59 IYHGVRKRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAIAIKGH 109 69**888.******843...6*********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.97E-32	58	118	No hit	No description
Pfam	PF00847	6.9E-13	58	109	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.142	59	116	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-30	59	117	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.56E-21	59	117	IPR016177	DNA-binding domain
SMART	SM00380	1.8E-35	59	122	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-9	60	71	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-9	82	98	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEEKDQSPII FNSNETTSSS SLTKRPITLA PSKQQTNYYK KFKSSTEKTK KIDDSKHPIY 60 HGVRKRSWGK WVSEIREPRK KSRIWLGTFA TPEMAARAHD VAAIAIKGHL ALLNFPELAH 120 QFPKPTSKFP KDIQSAAAKA AALDISPMEK QSKDELKEML CSVTIIHHGI WLELKAMALI 180 TVNFGLKKIS VCGINTATEL YSKPHNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-18	55	116	10	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	1e-170	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355509.1	2e-88	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q9LYD3	1e-45	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	M1A125	1e-88	M1A125_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400012314	2e-89	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-34	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]