PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_16129.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 284aa    MW: 33299.2 Da    PI: 10.4304
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_16129.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB62.97e-20227282257
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqre 57 
                              reqd+f+P an++rim+k+l  +akis++ k  +qec++efi fv++ea+d cq++
  Sme2.5_16129.1_g00001.1 227 REQDHFIPTANMVRIMHKILLPQAKISDEYKVAIQECITEFIRFVSGEANDICQQD 282
                              89***************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.0E-19221281IPR009072Histone-fold
SuperFamilySSF471131.36E-12229282IPR009072Histone-fold
PfamPF008081.3E-11232282IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MWLRVEEVRR AISRMKRGRA IRPDEISIDI WKNMVKDGIE WLNRLFNIII KTAKMPDEWR  60
RSTIVPLYKN KGDIQNCNNC RGIKLLSHTM KNSGDINDDV THHIVAAWTK WRLASGVLCD  120
KKIPPRLKVK FYRLVVRLSL LYGVECWPIK IAHIQKMHVA KMRMLRWMCG HTRSDKVRNE  180
TIREKLEVAP VADKMREARL RWVSKGLPAH LNQTIVVTAK DSQCATREQD HFIPTANMVR  240
IMHKILLPQA KISDEYKVAI QECITEFIRF VSGEANDICQ QDYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-16222282262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257880.16e-67PREDICTED: uncharacterized protein LOC109236117
TrEMBLA0A484KYM66e-78A0A484KYM6_9ASTE; Uncharacterized protein
TrEMBLA0A484LJU63e-79A0A484LJU6_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000499013e-55(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.27e-20nuclear factor Y, subunit B6