PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_16564.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 224aa    MW: 25965.2 Da    PI: 7.1482
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_16564.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.5e-2047100457
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              ++++++eq++ Le+ Fe ++++  e++++LA++l+L+ +qV vWFqNrRa++k+
  Sme2.5_16564.1_g00001.1  47 KRKLSEEQVNLLERSFEDTPKLGSERKAKLASELDLDPQQVAVWFQNRRARWKN 100
                              45899***********************************************95 PP
2HD-ZIP_I/II108.93.6e-3546136292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +kr+ls+eqv+lLE+sFe + kL +erK++la+eL+l+p+qvavWFqnrRAR+k+k lE +y++Lk++++    e +rLe e  ++
  Sme2.5_16564.1_g00001.1  46 RKRKLSEEQVNLLERSFEDTPKLGSERKAKLASELDLDPQQVAVWFQNRRARWKNKTLEDEYSKLKSHHEIAIVEICRLEIEILKI 131
                              8*****************999***************************************************************** PP

              HD-ZIP_I/II  88 reelk 92 
                              +e+l 
  Sme2.5_16564.1_g00001.1 132 KEQLF 136
                              99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.18441101IPR001356Homeobox domain
SuperFamilySSF466891.13E-1741104IPR009057Homeodomain-like
SMARTSM003891.5E-1844105IPR001356Homeobox domain
CDDcd000865.77E-1646101No hitNo description
PfamPF000464.5E-1747100IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-2048108IPR009057Homeodomain-like
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVMISQYYPG IYNQLVPNQG FSSEEGKPWR RRKKNKGETG NSGVVRKRKL SEEQVNLLER  60
SFEDTPKLGS ERKAKLASEL DLDPQQVAVW FQNRRARWKN KTLEDEYSKL KSHHEIAIVE  120
ICRLEIEILK IKEQLFEAQK EIQRLSLEHN CPRVSNNNST LHQVSMEQPH FLGEFGMEEI  180
LMDDNIFRVA DSVFDAQNTS HTSSSLNRAA TFSWGIWNGG NINE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12947RRRKKNKGETGNSGVVRKR
23148RKKNKGETGNSGVVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755156e-93HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234617.15e-82homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU702e-55ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A3Q7FG291e-80A0A3Q7FG29_SOLLC; Uncharacterized protein
STRINGSolyc03g034150.1.12e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-57homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]