PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_17021.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24325.1 Da    PI: 8.9901
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_17021.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.88.8e-16645342
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             ien+  r+v++ kR +g+l KA EL +LCdae+  ii+s+
  Sme2.5_17021.1_g00001.1  6 IENENERKVSYKKREKGLLTKADELGILCDAEITAIIYSP 45
                             9*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-10155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.301144IPR002100Transcription factor, MADS-box
CDDcd002669.34E-18279No hitNo description
SuperFamilySSF554552.88E-17289IPR002100Transcription factor, MADS-box
PfamPF003195.4E-16650IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKFALIENEN ERKVSYKKRE KGLLTKADEL GILCDAEITA IIYSPYKNEP TVFPNHGSAV  60
NTLTKFKELP ADYRSKTMVI RDGFTMKRIQ KLNEKLIKVR KENRVKENTN AMYEVLKEKY  120
IPTDMHPCDV NDLCYVIKKN LKQVREAMKK KIGEEGYTST FPQSIVGPMV PSGTKIEGPN  180
DPLLSHTGLE LSMIPPSSPL TFFSGINYER DED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341870.15e-72PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1D9362e-83M1D936_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000852564e-84(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.12e-24M-type_MADS family protein