PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_18208.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 558aa    MW: 62189.8 Da    PI: 8.2643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_18208.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.8e-157683499
                             SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                              t +l  +sg+sW v l   + +++ ++ +GW +Fvk++ L++gD++vF++dg+  f  +v++f++
  Sme2.5_18208.1_g00001.1  7 GTAVLVGPSGNSWPVDL--IQEDDGLFFHNGWVSFVKDHCLETGDSLVFRYDGDLYF--TVQIFDE 68
                             48999************..999999**************************997666..9999986 PP
2B354.52.1e-17223317198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                              f kv+++ + + s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+
  Sme2.5_18208.1_g00001.1 223 FTKVMKRFNISGSYTLHIPYQFATEHL--PNCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFELV 306
                              677777777788889***********6..45999****************77566666699***********************99 PP

                              SSSEE..EEEEE- CS
                       B3  86 grsefelvvkvfr 98 
                              ++ e  l+v+v+r
  Sme2.5_18208.1_g00001.1 307 RKCE--LRVRVLR 317
                              8544..5888877 PP
3B343.17.7e-14411495287
                              EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                              + ++++ +v+ s  l +p +f  eh   +++ ++++l +++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g
  Sme2.5_18208.1_g00001.1 411 VRIMKKFNVSGSYTLKVPCRFSMEHL--PNCRTEIVLHNLKGECWTVNSIPTVKVQTlHTFCGGWSAFVRENDIQMGDICIFELIG 494
                              5666777888888999*****99996..45889****************99888888999***********************998 PP

                              S CS
                       B3  87 r 87 
                              +
  Sme2.5_18208.1_g00001.1 495 K 495
                              6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.325169IPR003340B3 DNA binding domain
SMARTSM010193.4E-4169IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-17571IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-19671IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-12668IPR003340B3 DNA binding domain
CDDcd100178.99E-15667No hitNo description
SuperFamilySSF1019362.94E-24216317IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-23218317IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-20221317No hitNo description
SMARTSM010198.0E-16223319IPR003340B3 DNA binding domain
PfamPF023624.9E-15223317IPR003340B3 DNA binding domain
PROSITE profilePS5086313.803223319IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-22405498IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-20405498IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-18408495No hitNo description
SMARTSM010191.2E-6410511IPR003340B3 DNA binding domain
PfamPF023623.7E-11410495IPR003340B3 DNA binding domain
PROSITE profilePS5086311.744410511IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MEGRASGTAV LVGPSGNSWP VDLIQEDDGL FFHNGWVSFV KDHCLETGDS LVFRYDGDLY  60
FTVQIFDESS CEKESSYNAD CSQGATDLYN LALRKRDRGN SVSLDCIVEG VPKKLRSTQT  120
PSECTSSQDT HGLASSKDGY TTEDAVCSYA GRNYAASVLD ETENAGDALN NKVTIAVPAQ  180
AKIVFSNPAK VKTGNTSFEK DMWLPAQEAE KVAGLFTSSF PSFTKVMKRF NISGSYTLHI  240
PYQFATEHLP NCKVKILLHN LKGKTWTVNS IPTTRVQTSH TFCGGWLSFV RDNNIDLGDI  300
CIFELVRKCE LRVRVLRVEK EGNDCSSKRV AKAMTYDKQG SAPDKERHGN MLKNHLLHCQ  360
SKISSGDSAI RKPTSSQDKQ GSFTKSCMSM KSVPEEKLAA ESFISNFPHF VRIMKKFNVS  420
GSYTLKVPCR FSMEHLPNCR TEIVLHNLKG ECWTVNSIPT VKVQTLHTFC GGWSAFVREN  480
DIQMGDICIF ELIGKYEMRQ ARKILKILSK LWDNKVSTIT EAKDLKMLTM DALIGNLQTL  540
ELNRANNAAK KDQSLALK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145240.0CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069240.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A3Q7GAI80.0A0A3Q7GAI8_SOLLC; Uncharacterized protein
STRINGSolyc04g079590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-14B3 family protein