PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_18295.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 238aa MW: 26460.8 Da PI: 5.8633

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_18295.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.8	9.6e-19	133	219	4	98
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++ps+v+ +l lp +f++++ ++++ +tl de+g++W + ++++ l++GWk+F+ +++L +gD +vF+l++ ++ Sme2.5_18295.1_g00001.1 133 PMLPSHVSGGFWLGLPSNFCRKNL--PRRDDSITLVDETGEEWPTVY--LAQKCG--LSGGWKKFAVDHNLADGDAIVFHLIRPTK 212 6899****************94..345568***********..555555..9**********************9777 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v ++r Sme2.5_18295.1_g00001.1 213 F--KVYIIR 219 7..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.81E-25	123	221	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.4E-22	123	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.78E-28	128	219	No hit	No description
SMART	SM01019	7.5E-24	130	221	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.733	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-17	133	219	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
HYRVHQLEYK AAVTELLGKA AMIYSQRIRQ LEGEKMGLEG SHDEISEPLG NLRKAAATAN 60 QSFLRIALEL NDHFVVPTSV EYHEGSNVGL STPAKRDRLF FSYASDEERA ASIEKAEKLE 120 ASLGSDYPVL VRPMLPSHVS GGFWLGLPSN FCRKNLPRRD DSITLVDETG EEWPTVYLAQ 180 KCGLSGGWKK FAVDHNLADG DAIVFHLIRP TKFKVYIIRV SSASEGESTE TSSNDEAF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014511	9e-80	BT014511.1 Lycopersicon esculentum clone 133894R, mRNA sequence.
GenBank	HG975443	9e-80	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	9e-80	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015072119.1	1e-90	B3 domain-containing protein At5g42700-like
Swissprot	Q69V36	2e-50	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	M1ADZ4	8e-89	M1ADZ4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400020700	1e-89	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-49	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]