PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_18867.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 193aa    MW: 21265 Da    PI: 6.5035
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_18867.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB54.23.5e-17691105495
                    NF-YB  54 cqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                              ++ e+rkti++ddllwa+ +lGf+dyve+l ++l++yre++g
  Sme2.5_18867.1_g00001.1  69 TKVEQRKTITADDLLWAMDKLGFDDYVETLALFLQRYREFDG 110
                              578************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.52E-1169110IPR009072Histone-fold
PRINTSPR006152.9E-56987No hitNo description
Gene3DG3DSA:1.10.20.103.5E-1370110IPR009072Histone-fold
PRINTSPR006152.9E-588106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MINSNQVGGS RNGRFHSYCR SLQPIPACSP SPATGMNMGL PTHLNQAIDV TTKDSECAIW  60
EKNHFMPTTK VEQRKTITAD DLLWAMDKLG FDDYVETLAL FLQRYREFDG RGSLKGEPLV  120
LKRPIVDSAS GCNIMPYHLP PNFPMAYHHG YFGFPPTITK YMQADTSNGS TSQSAVAVAD  180
SEVDSPAKEG TSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168332.11e-68PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1
RefseqXP_015168333.11e-68PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1
TrEMBLA0A3Q7J7C72e-50A0A3Q7J7C7_SOLLC; Uncharacterized protein
STRINGSolyc10g009440.2.11e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.12e-19NF-YB family protein