PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_18917.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 148aa    MW: 16859.7 Da    PI: 10.1651
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_18917.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00137698123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ Cg+ F     L  H+r+H
  Sme2.5_18917.1_g00002.1 76 HECSLCGEEFALGQALGGHMRKH 98
                             78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-83798No hitNo description
SMARTSM003550.413961IPR015880Zinc finger, C2H2-like
PfamPF139128.6E-113962IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7023966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-474101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.27698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.34676103IPR007087Zinc finger, C2H2
PfamPF139121.0E-976101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MALKRSREEL LTVAVEKLAM VNCVDIMKRN ESLGQRKLYE CKTCKKQFVS FQALGGHRTS  60
HKNKLNSLPV IKMKKHECSL CGEEFALGQA LGGHMRKHRD ELNQKKKKLK SDEPLHNKGD  120
LGSTRTTLFL DLNLTPCENE LITRNIPT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759207.11e-57PREDICTED: zinc finger protein ZAT8-like
RefseqXP_016472191.11e-57PREDICTED: zinc finger protein ZAT8-like
TrEMBLA0A1S4A6J93e-56A0A1S4A6J9_TOBAC; zinc finger protein ZAT8-like
TrEMBLA0A1U7UT093e-56A0A1U7UT09_NICSY; zinc finger protein ZAT8-like
STRINGXP_009759207.14e-57(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-28C2H2 family protein