PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_19306.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 329aa    MW: 35998.9 Da    PI: 5.4407
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_19306.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-081355646
                             HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  6 teEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                              e d  + +a + ++ +   +W++Ia  ++ g+tl ++k+++  
  Sme2.5_19306.1_g00001.1 13 REQDIAFENALATYPEDcvdRWEKIADDVP-GKTLQDVKNHYEL 55
                             68999*************************.***********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-5759IPR001005SANT/Myb domain
CDDcd001673.16E-71257No hitNo description
SuperFamilySSF466894.65E-91265IPR009057Homeodomain-like
PfamPF002497.6E-61354IPR001005SANT/Myb domain
SuperFamilySSF634188.5E-8169231IPR000713Mur ligase, N-terminal catalytic domain
Gene3DG3DSA:3.40.1390.101.0E-10169232IPR000713Mur ligase, N-terminal catalytic domain
SuperFamilySSF536233.3E-12260328IPR013221Mur ligase, central
Gene3DG3DSA:3.40.1190.106.9E-15261328IPR013221Mur ligase, central
PfamPF082452.0E-11263328IPR013221Mur ligase, central
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009058Biological Processbiosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTVDKSRSSI CSREQDIAFE NALATYPEDC VDRWEKIADD VPGKTLQDVK NHYELLLDDV  60
SRIESGCVPL PCYNSSVDRS LCYGGGERTG KKTGGSERFN GEANDGENTV LSCHVSIALM  120
SPLTIPLHPS PFPLTKPINP QTTIFTLGSR KRILIPQPTF SASSNSPLWT VSEIVKSVNG  180
RIIRWGPPGT ICTDTRTLEP GQWFLPLVGQ NFDAHNFITP KLAIKGCVGV IGNWVCKGWN  240
NGKCRENHYK DYGSIGFGED AEGCGVLEMG MSKKGEILEL SRLCRPDGRV ILNVSAAHLE  300
YFANLEEVSM AKSEILTEAM PGDVCVLNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1412921285RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-134HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071914.11e-100uncharacterized protein LOC107015969 isoform X1
TrEMBLA0A0V0IQ417e-97A0A0V0IQ41_SOLCH; Putative ovule protein
TrEMBLA0A3Q7FZS61e-95A0A3Q7FZS6_SOLLC; Uncharacterized protein
STRINGSolyc04g008880.2.11e-97(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-25MYB family protein