PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_20831.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 118aa    MW: 13791.9 Da    PI: 8.4007
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_20831.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.82.3e-153762126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                             +ktelC+ ++ tG C+yGd+C+FaHg
  Sme2.5_20831.1_g00002.1 37 FKTELCNKWQDTGACPYGDNCQFAHG 62
                             79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.5E-203169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-123368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.683664IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-93663IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-123762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-570105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-670102IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.01974102IPR000571Zinc finger, CCCH-type
SMARTSM003561.674101IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
PKLNMCVVMM QQRVYVKGGS KKEEPPIELD VYNQGMFKTE LCNKWQDTGA CPYGDNCQFA  60
HGIEELRPVL RHPRYNAEVC RMVLNGDPCP YCHRCHFRHT LTDQEKLMRS LNSKMRSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-193799466Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2123041e-132AC212304.2 Solanum lycopersicum chromosome 05 clone C05HBa0309L13, complete sequence.
GenBankHG9755171e-132HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344185.13e-72PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F51e-48C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLM1D0A88e-71M1D0A8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000785221e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-51C3H family protein