PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_22293.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 277aa    MW: 31860 Da    PI: 6.0206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_22293.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.8e-131882581488
                              T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              + +++p  fa++ ++  ee   ++l +e+g+ Wev++  + ++ ++ +++GW eF ++n++  g+ + Fkl++ +
  Sme2.5_22293.1_g00001.1 188 NFMTIPMIFAKKTELFDEE--NMSLVNEKGKAWEVEI--EHTGYAVRIKRGWDEFRRQNKIAIGEACRFKLIKGD 258
                              679*********9777656..59999***********..77777899***********************99743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.294175269IPR003340B3 DNA binding domain
SMARTSM010190.0051178271IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-13182258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-15184261IPR015300DNA-binding pseudobarrel domain
CDDcd100174.77E-8188258No hitNo description
PfamPF023621.9E-11188259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
VLYEELSSSS EEETTRPLKR ARKMVPSDIE KRGIGVPSNY ESKHEDDPHY NNPKRENASL  60
DHNVVEIEYL VETDGSLVIS DHFAKNLSHG PLAEKRKTKI QREEGHGIPI YIQINVTVIK  120
EEENDIAVNL SINGNVIEKE EDDIPVNLQT NATVINKEEP QHNVLPNLNK LPQEKSLFLR  180
NAYSKVWNFM TIPMIFAKKT ELFDEENMSL VNEKGKAWEV EIEHTGYAVR IKRGWDEFRR  240
QNKIAIGEAC RFKLIKGDAA NILEVHKVPT PRSLQHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162984.12e-37PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM1DLV33e-45M1DLV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000910925e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.15e-08B3 family protein