PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_23501.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 132aa    MW: 15227.3 Da    PI: 9.6443
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_23501.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.4e-16411121287
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                               ++ +++pk+fa++ ++   e+k ++l +e+g++W vk+  + ++ ++ +++GW +F ++n+L +g+ + Fkl++ 
  Sme2.5_23501.1_g00001.1  41 HTNFMTIPKRFAARTKIF--EQKNMRLVNEEGKEWGVKI--EYNGHAIHIKGGWAKFRRENKLAVGEACRFKLIQG 112
                              45679*******999766..4558***************..66666788***********************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-2027121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-2028121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.43530124IPR003340B3 DNA binding domain
CDDcd100171.17E-1331112No hitNo description
SMARTSM010191.5E-1233124IPR003340B3 DNA binding domain
PfamPF023621.4E-1440114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
KDVGKDNSGS EEDAPNYSSR HSLVNFDCED PYFEIVIKKS HTNFMTIPKR FAARTKIFEQ  60
KNMRLVNEEG KEWGVKIEYN GHAIHIKGGW AKFRRENKLA VGEACRFKLI QGHAVNVLQF  120
HKIPTPGSLQ YY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162984.14e-51PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM0ZSN15e-49M0ZSN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000072009e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.19e-13B3 family protein