PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_24399.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Whirly
Protein Properties Length: 188aa    MW: 20773.5 Da    PI: 8.9888
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_24399.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly218.65.8e-68111491139
                   Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsn 86 
                              s+yk+kaal+v+++ p+f+ ldsg++kl+r+G ++l++a+a+++r+ydW++kq+f+ls+te++++++l++k+sceffhdp ++ s+
  Sme2.5_24399.1_g00001.1  11 SIYKGKAALTVEPRSPEFSPLDSGAFKLSRDGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSD 96 
                              7************************************************************************************* PP

                   Whirly  87 eGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                              eG+vrk+lkvePlpdGsG+f+nlsv+n+l++ +e++++Pv+kaefavl s+++
  Sme2.5_24399.1_g00001.1  97 EGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFN 149
                              *************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.104.1E-792171IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544476.83E-824188IPR009044ssDNA-binding transcriptional regulator
PfamPF085367.0E-6312146IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
ASTPKVFVGY SIYKGKAALT VEPRSPEFSP LDSGAFKLSR DGMVMLQFAP AAGVRQYDWS  60
RKQVFSLSVT EIGSIISLGA KDSCEFFHDP NKGRSDEGRV RKVLKVEPLP DGSGHFFNLS  120
VQNKLINLDE NIYIPVTKAE FAVLVSAFNF VVPYLLGWHT AANSFKPEDA SRSNNANPRS  180
GAELEWNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-135118733219p24: plant transcriptional regulator PBF-2
1l3a_B1e-135118733219p24: plant transcriptional regulator PBF-2
1l3a_C1e-135118733219p24: plant transcriptional regulator PBF-2
1l3a_D1e-135118733219p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2333420.0AF233342.1 Solanum tuberosum DNA-binding protein p24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548546.11e-136PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotQ9LL851e-137WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A1U8EQ771e-135A0A1U8EQ77_CAPAN; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A2G2YDT61e-135A0A2G2YDT6_CAPAN; single-stranded DNA-binding protein WHY1, chloroplastic
STRINGPGSC0003DMT4000454391e-135(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-110ssDNA-binding transcriptional regulator