PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_24839.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 455aa    MW: 49905 Da    PI: 8.9623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_24839.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-052141323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C++Cgk F r  nL+ H r H
  Sme2.5_24839.1_g00001.1 21 CEICGKGFQRDQNLQLHRRGH 41
                             *******************88 PP
2zf-C2H212.90.0003395117123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k++  +s+ k H +t+
  Sme2.5_24839.1_g00001.1  95 WKCDKCSKRYAVQSDWKAHSKTC 117
                              58*****************9998 PP
3zf-C2H210.60.0017125143523
                              TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                              dCg+ Fsr++++++H   +
  Sme2.5_24839.1_g00001.1 125 DCGTIFSRRDSFVTHRAFC 143
                              8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-51841IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-61841No hitNo description
SMARTSM003550.0761941IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4891941IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-583116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-690115No hitNo description
SMARTSM0035514095115IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
PEAEVIALSP KTLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR TSKEVRKRVY  60
VCPEKACVHH HPSRALGDLT GIKKHYCRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTR  120
EYRCDCGTIF SRRDSFVTHR AFCDALAEET ARVTAASNMH NPLAMGNNIN YHFIGAPLGP  180
NMAQHFSSLF KPVSNNNENS DPMRRDQISV WNMGVAQEQD QIGININNLP EIHQIGPLHT  240
SLAPTSATVY DAIASRSNAP PVSYNNNHVN WDQLIGSKIS SINNAEQLSN TSSANITVPS  300
LFSTQHQIAP SSTTPNMSAT ALLQKAAQIG ATTTTAVTDP SIFLGNFGMN NCNNNKLQQG  360
DNNKFCGFYV STPTTNNSIS NSLGSDVDQS SSVNEFSATI HPMQMYPPSK RRHIQTEDTA  420
KAGGGHGGGG GGLTRDFLGV GVQSICHPSS IDGWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3691158370Zinc finger protein JACKDAW
5b3h_F5e-3691158370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348832.20.0PREDICTED: zinc finger protein NUTCRACKER
SwissprotQ9ZWA61e-143IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLM1AJS60.0M1AJS6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000242720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-139C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]