PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_24940.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 254aa    MW: 27790.4 Da    PI: 9.9941
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_24940.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-18155188134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  Sme2.5_24940.1_g00001.1 155 CQHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 188
                              *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-16149199IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.424149185IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.0E-15153186IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.9E-15153212No hitNo description
CDDcd002021.00E-14154201No hitNo description
PROSITE patternPS003440155180IPR000679Zinc finger, GATA-type
PfamPF003203.5E-16155188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
YEDIVQLEWL STFVEDSFSG GGLTLGKENI PVEKEPSSQG KFQTSSPVSV LESSSSSSSS  60
VSSSGEKTLP LSPCHRGPQR ARTKRPRPTT FNPFPLFAAP GVPTESENFA ESPMKQILKP  120
AAPEQKKKKK IKFSIPLAPV ETNQNPVAQQ TVRKCQHCEI TKTPQWRAGP MGPKTLCNAC  180
GVRYKSGRLF PEYRPAASPT FVPSLHSNSH KKVLEMRTSI VSDNNAIARV SSPATATQPE  240
FNPSNNKSVE EEHK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18387KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345791.11e-155PREDICTED: GATA transcription factor 8-like
RefseqXP_006345792.11e-155PREDICTED: GATA transcription factor 8-like
RefseqXP_006345793.11e-155PREDICTED: GATA transcription factor 8-like
RefseqXP_006345794.11e-155PREDICTED: GATA transcription factor 8-like
RefseqXP_015163536.11e-155PREDICTED: GATA transcription factor 8-like
SwissprotQ6DBP85e-42GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A0V0HVM51e-156A0A0V0HVM5_SOLCH; GATA transcription factor
STRINGPGSC0003DMT4000599891e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-42GATA family protein