PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_25219.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 207aa    MW: 24158.9 Da    PI: 4.9867
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_25219.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-184093356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             k++++ ++q++ Le+ Fe ++++  e++ +LA++lgL+ rq+ +WFqNrRa++k
  Sme2.5_25219.1_g00001.1 40 KKRRLLPNQVQFLEKTFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYK 93
                             45578899*********************************************9 PP
2HD-ZIP_I/II122.52.1e-3939130192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl  +qv++LE++Fe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke e+
  Sme2.5_25219.1_g00001.1  39 EKKRRLLPNQVQFLEKTFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYKTKLLEKDYDVLKARFDKLKDDYDTLFKESED 124
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              Lr+e++
  Sme2.5_25219.1_g00001.1 125 LRNEVN 130
                              **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-182994IPR009057Homeodomain-like
PROSITE profilePS5007117.0543595IPR001356Homeobox domain
SMARTSM003891.6E-173899IPR001356Homeobox domain
CDDcd000861.27E-154095No hitNo description
PfamPF000461.2E-154093IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-184793IPR009057Homeodomain-like
PRINTSPR000316.1E-66675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000316.1E-67591IPR000047Helix-turn-helix motif
PfamPF021832.6E-1396136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVNFEDVGRG EVDKERPFLA AVEKELSNDD YDSCYHQPEK KRRLLPNQVQ FLEKTFEVDN  60
KLEPERKVQL ANELGLQPRQ IAIWFQNRRA RYKTKLLEKD YDVLKARFDK LKDDYDTLFK  120
ESEDLRNEVN LLTEKLHRRE EEKKNSEQSE PISPIDAQET QKATPIVVTS SIPKLVCKQE  180
DATSAKSDVI DSDSPHYTDG NHSSNVF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-123HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238764.11e-129homeobox-leucine zipper protein HAT5
TrEMBLA0A0V0I6661e-128A0A0V0I666_SOLCH; Putative ovule protein
STRINGSolyc05g006980.2.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-46homeobox 1