PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_25232.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 296aa    MW: 34561.1 Da    PI: 6.5779
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_25232.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.8e-112082771388
                              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              ++ +v+ k+  +e   +  e   ++l +e+g+ Wev++  + ++  + +++GW+eF ++n+++ g+ + Fkl++ +
  Sme2.5_25232.1_g00001.1 208 TNAIVIKKEESQELFDE--E--NMRLVNEKGKAWEVEI--EHTGYVVRIKRGWNEFRRQNKIDIGEACRFKLIQGD 277
                              55577777776666433..2..59**************..777777889**********************99753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.055168IPR003340B3 DNA binding domain
SMARTSM010191.1368IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-9968IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-111170IPR015300DNA-binding pseudobarrel domain
CDDcd100175.72E-81765No hitNo description
SMARTSM010190.011202290IPR003340B3 DNA binding domain
PfamPF023624.0E-9213278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-11215280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-9224277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.616227288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MLTKNCLLKT DMVGMWWEAK IVREKSNYFI CEGDWLQFVL HHQLKQGDVL LFFLVENSTF  60
HVQPFTKKYC NNIVHERQVL YEELSSSSEE ETTGPSKRAR KMVPSDTEKR SVGMPSNYES  120
KHEDNPHYNN PKRENASLDH SVENLSHGPL AEKRKRKIQR EEGHGIPIYI QTNVTVIKEE  180
ENDIAVNLQI NGNVIKKEED DILVNLQTNA IVIKKEESQE LFDEENMRLV NEKGKAWEVE  240
IEHTGYVVRI KRGWNEFRRQ NKIDIGEACR FKLIQGDAAN ILEVHKIPTP HSLQHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-08B3 family protein