PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_25685.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GRAS

Protein Properties

Length: 102aa MW: 10924.2 Da PI: 4.5608

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_25685.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	32	1.5e-10	1	56	131	184
GRAS 131 aLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 aLa Rp+g+p++R+ g+g + s++ l+++g La+fAe++gv+fef ++a+ Sme2.5_25685.1_g00001.1 1 ALALRPGGSPTFRLWGIGGYPQLddSTDPLQKVGFHLAQFAESIGVEFEFGGFMAN 56 79*************974443589**********************997554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	5.4E-8	1	56	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	10.781	1	102	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
ALALRPGGSP TFRLWGIGGY PQLDDSTDPL QKVGFHLAQF AESIGVEFEF GGFMANIAYA 60 IGTLSKGTIN VGLHYSTFPV VFEGYSGATW NFDLNDSKSI TA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF330774	1e-36	JF330774.1 Capsicum annuum clone BAC CaCM278G16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249835.2	8e-23	DELLA protein GAI-like
Swissprot	Q7Y1B6	2e-17	GAI_SOLLC; DELLA protein GAI
TrEMBL	M1BNR8	3e-22	M1BNR8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400049445	5e-23	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA25	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	9e-17	RGA-like 2

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]