PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_25859.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 154aa    MW: 18412.5 Da    PI: 4.7918
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_25859.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.6e-1054139895
                              -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                       B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                              +++++++  ++p + +++++++   +  +t++d+ gr++e +++ +  + r++l++GW++ ++ n ++  D ++ +++++ s+++ 
  Sme2.5_25859.1_g00001.1  54 EMSGTHKKKYIPIDLVRDYKLE--FPPSITIRDSIGREFETRVKKWVDD-RVWLAGGWRNLCRWNLVEKDDRCICEFVREkSSKRI 136
                              567788889**********887..5557999************888886.89************************9988788776 PP

                              EEE CS
                       B3  93 vvk 95 
                              +++
  Sme2.5_25859.1_g00001.1 137 HLQ 139
                              665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.68447146IPR003340B3 DNA binding domain
PfamPF023624.3E-855137IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1160143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1460139IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
YIVEEEDTKE QVEKEEKEET HETALCSKCR YVEEKEEDKN EGEREEEIEE IGNEMSGTHK  60
KKYIPIDLVR DYKLEFPPSI TIRDSIGREF ETRVKKWVDD RVWLAGGWRN LCRWNLVEKD  120
DRCICEFVRE KSSKRIHLQV QVLHEGSSSH PDNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089724.18e-44B3 domain-containing protein At5g60140-like
TrEMBLM1DCJ61e-46M1DCJ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000868152e-47(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.15e-08B3 family protein