PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_26729.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 123aa MW: 14100.2 Da PI: 5.8277

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_26729.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	44.4	3.6e-14	1	43	10	53
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacel 53 +e++ +fkn elP++ ikkilk+d+dv+m+ ae+P++l++ac Sme2.5_26729.1_g00001.1 1 MEQVDNFKN-ELPITHIKKILKSDKDVHMVFAESPIFLANACTT 43 799999998.7*******************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.1E-9	4	41	IPR009072	Histone-fold
SuperFamily	SSF47113	1.96E-5	8	44	IPR009072	Histone-fold
Pfam	PF00808	8.9E-6	10	43	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MEQVDNFKNE LPITHIKKIL KSDKDVHMVF AESPIFLANA CTTIREARDI ETMTLNKLVG 60 NLKTYEMNME DQKKQVAAAE KLLALKAASD DEVSDPDEDQ IAFLAKNFKK FLRKGKEKDN 120 REI

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA26	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50480.1	5e-12	nuclear factor Y, subunit C6