PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_27190.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 318aa    MW: 35941.1 Da    PI: 8.4792
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_27190.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.42.9e-161050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +ien ++r++++ kR++g+l KA+EL +LCd+e +++++s+
  Sme2.5_27190.1_g00001.1 10 FIENITKRKISYRKRQKGLLSKAHELNTLCDVELSIVVYSP 50
                             8***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.698149IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-18160IPR002100Transcription factor, MADS-box
CDDcd002664.21E-20282No hitNo description
SuperFamilySSF554551.16E-18295IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-12323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTRAKVKLDF IENITKRKIS YRKRQKGLLS KAHELNTLCD VELSIVVYSP YHEAPKVFPN  60
HEATINTFTK FKELSTSIRS SNMTTQEKIT KQRIQKIEKQ LGKVRKENRI MELTNQMYEL  120
LNGTDIPTNM QPSDLNNLSY IVNQHMKQVH DAEGSTLHAP QPISGVIVGS GTSFDMPRAP  180
LLASVGDLSQ VPSSFSSHMF PLIPHQMDLR RALEMTHPIP PTTMAYPMPS SANDPPMSTL  240
VFPPIAPKIH PSMNIPSINA SMPIDNNHNR SFENPSFSQL LSLSDDDIRT LLDDTRTLLD  300
DTSFNINVQD PNHHHRNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319833.11e-98agamous-like MADS-box protein AGL65
TrEMBLM1C7X31e-103M1C7X3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000617241e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-28M-type_MADS family protein