PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_27886.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 184aa    MW: 21573.1 Da    PI: 10.5025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_27886.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376e-1216801890
                             --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                       B3 18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                             +p  f+ ++  g+++   +   +  ++g++W vk+  ++ +    l++GWk+F+k+n+L+ gD +vF+++g+ ef
  Sme2.5_27886.1_g00001.1 16 IPIGFF-KYlkGLNH---VNHAILRRTGKKWLVKV--NGWR----LEEGWKKFAKENDLQLGDLLVFRHEGNLEF 80
                             677777.45455553...34566779*********..6666....9**********************9987444 PP
2B3474.7e-15831531892
                              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                              lpk+fa ++g+ + ++++l+++de+ r W+++l    ++++ +vl+ GW +F+ an L+egD ++F+++++ ++++
  Sme2.5_27886.1_g00001.1  83 LPKRFAMANGLFN-KKRDLIIRDERQRLWNLRL--APYGSSvHVLG-GWFRFCTANSLQEGDYMMFEVVSN-GEKP 153
                              9********7664.5569***************..88888857777.********************8875.3334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010199.9E-5181IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-13880IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-131280IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-91579IPR003340B3 DNA binding domain
CDDcd100176.51E-111676No hitNo description
PROSITE profilePS508636.0473465IPR003340B3 DNA binding domain
PROSITE profilePS5086312.42166160IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-1482157IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-1282155IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-1582157IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-1282145No hitNo description
SMARTSM010190.001382161IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MVYSLQNPLV LFQWKIPIGF FKYLKGLNHV NHAILRRTGK KWLVKVNGWR LEEGWKKFAK  60
ENDLQLGDLL VFRHEGNLEF ERLPKRFAMA NGLFNKKRDL IIRDERQRLW NLRLAPYGSS  120
VHVLGGWFRF CTANSLQEGD YMMFEVVSNG EKPIWKFHSI TDRRHKTSDV ATPVNVLGIE  180
GCQA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-61HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553642.12e-49PREDICTED: putative B3 domain-containing protein REM15 isoform X3
TrEMBLA0A1U8F2Q25e-48A0A1U8F2Q2_CAPAN; putative B3 domain-containing protein REM15 isoform X3
STRINGPGSC0003DMT4000246482e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.14e-18B3 family protein