PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_28554.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 143aa MW: 15211.3 Da PI: 10.7386

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_28554.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.7	6.3e-09	2	37	12	47
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Sme2.5_28554.1_g00001.1 2 FLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 37 777899*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.706	1	42	IPR017930	Myb domain
SuperFamily	SSF46689	3.14E-10	1	43	IPR009057	Homeodomain-like
CDD	cd00167	1.52E-6	1	38	No hit	No description
TIGRFAMs	TIGR01557	1.7E-11	2	40	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-7	2	37	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-6	2	36	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
LFLLGLEKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR TSIHDITSVN 60 SGDVSVPQVP ITGQTIGAGA GGSSGKSIKQ SRAAPIAPVG LGMYGTTTVG QPVAGPLVNV 120 VGQRQIQGLD IMGSSLGFYY DQS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016572400.1	2e-85	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q9FNN6	2e-48	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2G2X9C5	2e-84	A0A2G2X9C5_CAPBA; Transcription factor DIVARICATA
STRING	PGSC0003DMT400065102	2e-82	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4149	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-45	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]