PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_29288.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 328aa    MW: 37569.9 Da    PI: 4.7594
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_29288.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.5e-142373091288
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               ++ +++p  fa++ ++  ee   ++l +e+g+ Wev++  + ++ ++ +++GW eF ++n++  g+++ Fkl++ +
  Sme2.5_29288.1_g00001.1 237 HTNFMTIPMIFAKKTELFDEE--NMRLVNEKGKAWEVEI--EHTGYAVRIKRGWDEFRRQNKIAIGETCRFKLIQGD 309
                              45679*********9777656..5***************..77777899***********************99753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-15223309IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-16223311IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.153226320IPR003340B3 DNA binding domain
CDDcd100178.75E-11227309No hitNo description
SMARTSM010191.6E-6229322IPR003340B3 DNA binding domain
PfamPF023622.7E-12236310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
VLYEELSSSS EEETTRPLKR ARKMVPSDIE KRGIGMPSNY ESKHEDDPHY NNPKRENASL  60
DHNVVEIEYL VETDGSLVIS DHFAKNLSHG PLAEKRKTKI QREEGHGIPI YIQINVTVIK  120
EEENDIAVNL SINGNVIEKE EDDIPVNLQT NVIVIKKEES QEISEGSKEL EQQHNIATEI  180
SEGSKELEQQ HNIATDEEVG KANSGSAEDG PNYCSRYSLM NFDCDDPYFE IVIKKSHTNF  240
MTIPMIFAKK TELFDEENMR LVNEKGKAWE VEIEHTGYAV RIKRGWDEFR RQNKIAIGET  300
CRFKLIQGDA ANILEVYKIP TPHSLQHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162984.13e-63PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM1DLV32e-73M1DLV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000910923e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-08B3 family protein