PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_29372.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 246aa    MW: 28112.3 Da    PI: 5.0482
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_29372.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.6e-13150226787
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              + +  ++++ ++p  fa++ ++  ee   ++l +e+g+ Wev++  + ++ ++ +++GW eF ++n++  g+ + Fkl++ 
  Sme2.5_29372.1_g00001.1 150 QQHGIATDMETIPMIFAKKTELFDEE--NMSLVNEKGKAWEVEI--EHTGYAVRIKRGWDEFRRQNKIAIGEACRFKLIQG 226
                              56667778789*******99777656..59999***********..77777899***********************9963 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.617144238IPR003340B3 DNA binding domain
PfamPF023624.3E-11151228IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-12157231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-14158231IPR015300DNA-binding pseudobarrel domain
CDDcd100175.11E-7160227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
YEELSSSSEE ETTGPSNRAR NMVPSDTEKR SVGVPSNYES KHEDDPHYNN PKRENASLDH  60
SVENLSHGPL AEKRKRKVQR EEGHGIPIYI QTNVAVIKEE ENDIAVNLQI NGNVIKKEED  120
DIPVNLQTNA IVIKKEESQE ISEGSKELEQ QHGIATDMET IPMIFAKKTE LFDEENMSLV  180
NEKGKAWEVE IEHTGYAVRI KRGWDEFRRQ NKIAIGEACR FKLIQGDAMN ILEVHKIPTP  240
RSLQHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015162984.11e-36PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM1DLV36e-46M1DLV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000910929e-47(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-09B3 family protein