PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_30503.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 166aa    MW: 18631.2 Da    PI: 8.7667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_30503.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.1e-172791898
                             --HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                             +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e  l+v+v+r
  Sme2.5_30503.1_g00001.1  2 IPYQFATEHL--PNCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFELVRKCE--LRVRVLR 79
                             9********6..45999****************77566666699***********************998544..5888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-19179IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.93181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-19179IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-7281IPR003340B3 DNA binding domain
PfamPF023623.4E-14279IPR003340B3 DNA binding domain
CDDcd100171.28E-15279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
HIPYQFATEH LPNCKVKILL HNLKGKTWTV NSIPTTRVQT SHTFCGGWLS FVRDNNIDLG  60
DICIFELVRK CELRVRVLRV EKEGNDCSSK VVHEGLVTDY AKNSGCKSWI VGANSNHCLQ  120
RVAKAMTYDK QGSAPDKERH GNMLKNHLLH CQSKISSGDS GNLNDN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-154HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354943.19e-96PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_006354944.19e-96PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A0V0IN533e-94A0A0V0IN53_SOLCH; Putative B3 domain-containing protein-like
STRINGSolyc04g079590.2.12e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.17e-10VERDANDI