PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_32509.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 220aa MW: 24507.5 Da PI: 6.5057

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_32509.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	24	49	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C +C ksF +k ++++Hi H Sme2.5_32509.1_g00001.1 24 YICAapYCFKSFLNKTEFESHIHEnH 49 889999****************8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.663	24	50	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	26	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
TFVLFSCDER IQKIQTIPKL EEVYICAAPY CFKSFLNKTE FESHIHENHS DLLVKIAEKD 60 DYISESASAK KPATSESTLQ APTRSIFSPS SGSQVHDRED KAHNALTRDQ QPPRPFMQQK 120 PPFTGSIKNH PLEQQYANPR SGFERPGMQY QLLQQGCAQG SLQPDPGHFP DKQQGIVGSF 180 PFPEYPMGMP QPHGFAVPMS SNSGLAPQFG YPPFAPDGPQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542306.1	1e-110	PREDICTED: E3 ubiquitin-protein ligase Hakai
TrEMBL	A0A2G3BKT2	1e-111	A0A2G3BKT2_CAPCH; Uncharacterized protein
STRING	XP_009786415.1	1e-100	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6404	4	5