PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G002500.1.p
Common NameSb01g000352, SORBIDRAFT_01g000352
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 295aa    MW: 30988.6 Da    PI: 8.2762
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G002500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18151202256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr ++ +g+++AeIrd ++ng   r++lg+f++ae Aa a+++a+ +++g+
  Sobic.001G002500.1.p 151 PYRGVRKRP-WGKFAAEIRDSTSNG--VRVWLGTFDSAEAAALAYDQAAFAMRGA 202
                           59*******.**********66687..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-36151215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-30151210IPR001471AP2/ERF domain
PROSITE profilePS5103222.813151209IPR001471AP2/ERF domain
CDDcd000187.37E-14152186No hitNo description
SuperFamilySSF541711.05E-21152211IPR016177DNA-binding domain
PRINTSPR003675.3E-10152163IPR001471AP2/ERF domain
PfamPF008477.7E-13152201IPR001471AP2/ERF domain
PRINTSPR003675.3E-10175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MVSSTSHSQN SNNSPPPPPP VHLSTGIVGF LARRRAAMAT THHPSSFQFQ QPRVAAAPLD  60
SPGSSTSSVD SSAPWSCMAQ AQQQHRAPPA PVLPFDSNDT DEMALLDMIA GQGQEEAGLV  120
LATSKQEEAE ANNGTGGAVG PGAGAGAGGR PYRGVRKRPW GKFAAEIRDS TSNGVRVWLG  180
TFDSAEAAAL AYDQAAFAMR GAAAVLNFPV ERVRQSLEGM GMGTGTDSGS PVVALKRRHS  240
MRMRVRRPAS RSRKAKAATR SEVMELEDLG ADYLEALLGA TEESESLCRT HHSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-27142211574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G002500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699801e-94BT069980.1 Zea mays full-length cDNA clone ZM_BFb0349F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463464.20.0ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y95e-54ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLC5WRV00.0C5WRV0_SORBI; Uncharacterized protein
STRINGSb01g000352.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-27ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]